PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06832.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 379aa    MW: 42390.2 Da    PI: 4.8347
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06832.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM286.3e-094511838128
                      NAM  38 diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvm 123
                              + y+++P++Lp       +++ f +++ +        ++ tk+g W+a+g+  e+++ + +  g  +t+ f++ +a   ++t W+m
  Sme2.5_06832.1_g00001.1  45 NPYQYDPSNLP-------DRTCFLVRKIE--------EKETKHGSWRAKGQ-SEIFA-NATISGRITTFEFFRVQAAIEQRTVWMM 113
                              56666666666.......12334444333........456899*******9.67887.78899*********************** PP

                      NAM 124 heyrl 128
                              +eyr+
  Sme2.5_06832.1_g00001.1 114 QEYRV 118
                              ***97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.6279140IPR003441NAC domain
SuperFamilySSF1019412.09E-1223138IPR003441NAC domain
PfamPF023655.4E-526118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MLPPAASTPP PDLMSFYGTR DNIFLFLDRI NRGSGAIPDD VIVDNPYQYD PSNLPDRTCF  60
LVRKIEEKET KHGSWRAKGQ SEIFANATIS GRITTFEFFR VQAAIEQRTV WMMQEYRVTP  120
QAKHDQTKSQ ESALCKFFSL QNDPEPELND DLELAKRLSM FTSCNDGQRS IGEQMRSDCI  180
LRGDYLELDD LTKGAGSSLV DKSRDQAVDD KVDEIGDYLE LDDLAYAASR SSSSTNSSCQ  240
SFKSDEYFDF MELADLDDDK KEDLSGKGST SNHSIMMCVI ANDVVVQPAP LGFLAEESDN  300
AAAKETKQAP DKNKSKSPIE PSSEKASKKL KAKHVDEGPS HARRATTSSS SSNDEPGRAA  360
RREEKRSKKL MKYLCFMPF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006367296.11e-146PREDICTED: uncharacterized protein LOC102588141 isoform X1
TrEMBLM1CP101e-146M1CP10_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000715961e-145(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112072123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.24e-07NAC domain containing protein 38